Month: July 2022

What’s so “special” about SARS-CoV-2 Omicron subvariants BA.4 and BA.5?

FA Manian MD, MPH, , , , , , , , , , , , , , , , Leave a comment

BA.4 and BA.5 now account for the majority of Covid cases in the U.S.1  Several concerning features of BA.4 and BA.5 when compared to earlier strains of SARS-CoV-2 include:2-6

  1. High reproductive rate or R0 ie, the average number of new infections generated by an infectious person in a totally naïve population. BA.4/5 has an estimated R0 of 18.6, according to a one report.  For comparison, the R0 for the original Wuhan variant was estimated at 3.3, for Delta  5.1, early Omicron  9.5, BA.1 13.3, mumps 12, and measles 18.  So, it’s not surprising that we are currently experiencing higher rates of SARS-CoV-2 transmission in the population than just a few weeks ago.3
  2. Suboptimal existing immunity following prior infections due to Omicron variants BA.1 and BA.2, or prior vaccinations (including 3 doses of Pfizer vaccine).2,4
  3. More efficient spread than BA.2 when studied in human lung cells invitro. 2
  4. More pathogenic than BA.2 in hamsters. 2
  5. Reduced activity of SARS-CoV-2 therapeutic monoclonal antibodies.4
  6. Antigenically distant from other SARS-CoV-2 variants, with 50 mutations, including more than 30 on the spike protein, the viral protein targeted by Covid vaccines to induce immunity.5,6

Despite these potentially ominous traits, currently there is no evidence that  BA.4 or BA.5 is inherently more likely to cause severe disease than that caused by other Omicron subvariants.   The sheer number of infected persons in the population due to high transmission rates, however, will likely translate into higher hospitalization and deaths which has already happened in many areas.

High transmission rates also mean that we should not abandon the usual public health measures (eg, social distancing, masking indoors in public spaces) and vaccination with boosters for eligible persons with the aim of reducing hospitalization and death, if not infections.  

Bonus Pearl: Did you know that BA.4 and BA.5 became dominant in South Africa in April, 2022, despite 98% of the population reportedly having some antibodies from vaccination or previous infection or both?  

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References

  1. Leatherby L. What the BA.5 subvariant could mean for the United States. NY Times, July 7, 2022. https://theconversation.com/australia-is-heading-for-its-third-omicron-wave-heres-what-to-expect-from-ba-4-and-ba-5-185598
  2. Kimura I, Ymasoba D, Tamura T, et al. Virological characteristics of the novel SARS-CoV-2 Omicron variants including BA.2.12.1, BA.4 and BA.5. bioRxiv, preprint doi: https://doi.org/10.1101/2022.05.26.493539 , posted May 26, 2022. Accessed July, 13, 2022.
  3. Esterman D. The Conversation. Australia is heading for its third Omicron wave. Here’s what to expect from BA.4 and BA.5. July 4, 2022. https://theconversation.com/australia-is-heading-for-its-third-omicron-wave-heres-what-to-expect-from-ba-4-and-ba-5-185598
  4. Tuekprakhon A, Nutalai R, Dijokaite-Guraliuc A, et al. Antibody escape of SARS-COV-2 Omicron BA.4 and BA.5 from vaccine and BA.1 serum.
  5. Katella K. Omicron and BA.5: A guide to what we know. YaleMedicine, July 6, 2022. https://www.yalemedicine.org/news/5-things-to-know-omicron
  6. Topol E. The BA.5 story. The takeover by this Omicron sub-variant is not pretty. Ground Truths. June 27, 2022. https://erictopol.substack.com/p/the-ba5-story

Disclosures: The listed questions and answers are solely the responsibility of the author and do not necessarily represent the official views of Mercy Hospital-St. Louis, Massachusetts General Hospital, Harvard Catalyst, Harvard University, their affiliate academic healthcare centers, or its contributors. Although every effort has been made to provide accurate information, the author is far from being perfect. The reader is urged to verify the content of the material with other sources as deemed appropriate and exercise clinical judgment in the interpretation and application of the information provided herein. No responsibility for an adverse outcome or guarantees for a favorable clinical result is assumed by the author. Thank you!

What’s so “special” about SARS-CoV-2 Omicron subvariants BA.4 and BA.5?

My elderly patient with UTI and E. coli bacteremia is ready to be switched from IV to oral antibiotic. Can I consider an oral beta-lactam in place of a fluoroquinolone or trimethoprim-sulfamethoxazole to complete an adequate course of antibiotic therapy at home.

FA Manian MD, MPH, , , , , , , , Leave a comment

Although oral fluoroquinolones (FQs) and trimethoprim-sulfamethoxazole (TMP-SMX) have been routinely recommended as step-down therapy for treatment of Enterobacterales bacteremia owing to their high bioavailability, increasing evidence suggests that beta-lactam (BL) antibiotics (particularly those with high bioavailability, such as cephalexin) are as effective without the attendant adverse risks associated with FQs—with increasing FDA warnings—and TMP-SMX.1,2

In the largest study to date involving a retrospective review of over 4,000 cases of Enterobacterales UTI-associated bacteremia (eg, E. coli, Proteus spp., Klebsiella spp) in Veterans Affairs hospitals, no significant difference in the main outcome (composite of 30-day all cause mortality or 30-day recurrent bacteremia) was found between the oral beta-lactam and FQ/TMP-SMX groups (4.4% vs 3.0%, respectively); additionally, when examined separately, no significant difference in mortality (3.0% vs 2.6%) or recurrent bacteremia (1.5% vs 0.4%) was found. 1

A meta-analysis of 8 retrospective studies (2019) also failed to find a significant difference in mortality or recurrent bacteremia between BLs and FQs or TMP-SMX groups; it did find a higher odds of any recurrent infection, however (5.5% vs 2.0% (O.R. 2.06, 1.18-3.61). 2

Before selecting an antibiotic, however, it’s important to recall that not all oral BLs are  created equal, with some having better bioavailability than others.   More specifically, it may not be common knowledge that cephalexin (“Keflex”), a commonly prescribed and inexpensive cephalosporin with great safety profile, has 90-100% bioavailability, rivaling those of FQs or TMP-SMX.

 Of interest, in a subset of patients who received cephalexin as step-down therapy (n=245) in the VA study above, the outcomes were nearly identical to those who received FQ or TMP-SMX, with a 30-d recurrent bacteremia of 0% and a 30-day mortality of 2% (vs 0.4% and 2.5% for ciprofloxacin and 1.0% and 2.4% for TMP-STX, respectively). Of note nearly one-half of the cephalexin group received a higher dose of 500 mg 4x/day, with the rest receiving less frequent dosing. 

These findings makes one wonder whether suboptimal oral BL dosing may not have contributed to the discrepant results from earlier studies suggesting the superiority of FQs or TMP-SMX over oral BLs as step-down therapy. 1,2

 

Bonus Pearl: Did you know that cephalexin may be given up to 4 gm/day in 4 divided doses with 90% of the drug excreted unchanged in the urine? 3

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References

  1. Sutton JD, Stevens VW, Chang NCN, Khader K, et al. Oral beta-lactam antibiotics vs fluoroquinolones or trimethoprim-sulfamethoxazole for definite treatment of Enterobacterales bacteremia from a urine source. JAMA Network Open 2020;3 (10):e20220166. Oral β-Lactam Antibiotics vs Fluoroquinolones or Trimethoprim-Sulfamethoxazole for Definitive Treatment of Enterobacterales Bacteremia From a Urine Source – PubMed (nih.gov)
  2. Punjabi C, Tien V, Meng L, et al. Oral fluoroquinolone or trimethoprim-sulfamethoxazole vs beta-lactams as step-down therapy for Enterobacteriaceae bacteremia: systematic review and meta-analysis. Open Forum Infect Dis 2019;6:ofz364 doi:10.1.1093/ofid/ofz364   https://pubmed.ncbi.nlm.nih.gov/31412127/
  3. Herman TF, Hasmi MF. Cephalexin. StatPearls (internet). https://www.ncbi.nlm.nih.gov/books/NBK549780/ Accessed July 10, 2022.

Disclosures: The listed questions and answers are solely the responsibility of the author and do not necessarily represent the official views of Mercy Hospital-St. Louis, Massachusetts General Hospital, Harvard Catalyst, Harvard University, their affiliate academic healthcare centers, or its contributors. Although every effort has been made to provide accurate information, the author is far from being perfect. The reader is urged to verify the content of the material with other sources as deemed appropriate and exercise clinical judgment in the interpretation and application of the information provided herein. No responsibility for an adverse outcome or guarantees for a favorable clinical result is assumed by the author. Thank you!

My elderly patient with UTI and E. coli bacteremia is ready to be switched from IV to oral antibiotic. Can I consider an oral beta-lactam in place of a fluoroquinolone or trimethoprim-sulfamethoxazole to complete an adequate course of antibiotic therapy at home.

How would you answer these 7 most popular clinical questions of 2022 on Pearls4Peers??

FA Manian MD, MPH, , , , , , , , , , , , , , Leave a comment

Peers,

www.Pearls4Peers.com just turned 7 with 2022 poised to become its best year ever in viewership  (>30,000 views so far)!  To mark this “momentous” occasion, I thought I would share with you, loyal viewers and subscribers, the 7 most viewed posts  of 2022 at its midway point.  Imagine rounding on the wards with your team and someone asks you one or more of these questions.  Take a crack at answering them and compare your answers with those of P4P (Ctrl+Click)! Have fun!

  1. What is the significance of teardrop cells(dacrocytes) on the peripheral smear of my patient with newly-discovered pancytopenia?
  2.  My elderly patient developed a flare-up of her gout few days after receiving covid-19 vaccine. Is there a connection between immunization and gout flare? 
  3. What is the clinical relevance of the “SPICE” organisms? 
  4. What does an “indeterminate” result in QuantiFERON Gold in-Tube Test for latent tuberculosis really mean? 
  5. What is the difference between “moderate” and “high complexity” medical decision making under the Centers for Medicare and Medicaid Services (CMS) rule? 
  6. The urine culture of my female patient with urgency is growing Lactobacillus. Should I treat it?
  7. Why is serum AST levels generally higher than ALT in alcohol-induced liver injury?

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Disclosures: The listed questions and answers are solely the responsibility of the author and do not necessarily represent the official views of Mercy Hospital-St. Louis, Massachusetts General Hospital, Harvard Catalyst, Harvard University, their affiliate academic healthcare centers, or its contributors. Although every effort has been made to provide accurate information, the author is far from being perfect. The reader is urged to verify the content of the material with other sources as deemed appropriate and exercise clinical judgment in the interpretation and application of the information provided herein. No responsibility for an adverse outcome or guarantees for a favorable clinical result is assumed by the author. Thank you!

How would you answer these 7 most popular clinical questions of 2022 on Pearls4Peers??